- J. Siódmiak, A. Gadomski, ”Growing lysozyme crystals under variety of physicochemical conditions – a computer modelling”, J. Noncryst. Solids 354/35-39 (2008) 4221-4226. PDF
- A. Gadomski, J. Siódmiak, J. J. Uher, ”Constrained RandomWalk of a carrier in two-dimensional site-percolation lattice, exemplified by virtual and real world scenarios”, Acta Phys. Polon. B 32/5 (2001) 1541-1560. PDF
- A. Gadomski, J. Siódmiak, “Kinetics of protein crystal growth in mass convection regime”, Crystal Research & Technol. 37 (2002) 281-291. PDF
- A. Gadomski, J. Siódmiak, ”A novel model of protein crystal growth: Kinetic limits, length scales, and a role of double–layer”, Croat. Chem. Acta, 76 (2) (2003) 129-136. PDF + erratum
- A. Gadomski, J. Siódmiak, “(Bio)Polymer Crystallization in Water-Containing Environments under Complex Conditions”, Proceedings of the 3rd International Symposium on Food Rheology and Structure, Zurich 9-13.02.2003, Switzerland. PDF
- A. Gadomski, J. Siódmiak, ”On the elastic contribution to crystal growth in complex environments”, Physica Status Solidi B, 242/3 (2005) 538-549. PDF
- A. Gadomski, J. Siódmiak, I.Santamaría-Holek, J. M. Rubí, M. Ausloos, ”Kinetics of growth process controlled by mass-convective fluctuations and finite-size curvature effects”, Acta Physica Polonica B 36/5 (2005) 1537-1559. PDF
- J. Siódmiak, A. Gadomski, ”Computer model of biopolymer crystal growth and aggregation by addition of macromolecular units – a comparative study”, Int. J. Modern Phys. C 17/7 (2006) 1037-1054. PDF
- J. Siódmiak, A. Gadomski, E. Pechkova, C. Nicolini ”Computer model of a lysozyme crystal growth with/without nanotemplate – a comparison”, Int. J. Modern Phys. C 17/9 (2006) 1359-1366. PDF
- J. Siódmiak, J. J. Uher, I. Santamaría-Holek, N. Kruszewska, A. Gadomski, ”On the protein crystal formation as an interface-controlled process with prototype ion-channeling effect”, J. Biol. Phys. 33/4 (2007) 313-329 (SpringerLink Date: Wednesday, July 02, 2008). PDF
- J. Siódmiak, ”Protein crystal’s shape and polymorphism prediction within the limits resulting from the exploration of the Miyazawa-Jernigan matrix”, Biosystems 94 (2008) 233-241. PDF
- J. Siódmiak, I. Santamaría-Holek, A. Gadomski, ”On morphological selection rule of noisy character applied to model (dis)orderly protein formations”, J. Chem. Phys. 132 (2010) 195103. PDF
- J. Siódmiak, A. Gadomski , ”Model lysozyme crystal versus aggregate (un)confined formation as viewed by recent theory aided by computer experiment” in Synchrotron Radiation and Structural Proteomics Pan Stanford Series on Nanobiotechnology – Volume 3 by Eugenia Pechkova and Christian Riekel (ESRF, Grenoble, France) Pub Date: Winter 2012. PDF
- A. Gadomskia, J. Siódmiaka,“Biofizyka dla kierunku Inżynieria Biomedyczna na Wydziale Inżynierii Mechanicznej UTP Bydgoszcz”, skrypt do przedmiotu “Biofizyka”, 2012.
- A. Gadomskia, J. Siódmiaka, I. Santamaría-Holek, “On the origin of the phase–space diffusion limit in (dis)ordered protein aggregation”, Physica A 392 (2013) 3155–3167. PDF
- J. Siódmiak, “Biomolecular Crystallization in Silico as a Source of the Colour Noise“, Acta Phys. Polon. B 47/11 (2016) 2399-2412. PDF
- J. Siódmiak, P. Bełdowski, W. K. Augé II, D. Ledziński, S. Śmigiel, A. Gadomski, “Molecular Dynamic Analysis of Hyaluronic Acid and Phospholipid Interaction in Tribological Surgical Adjuvant Design for Osteoarthritis“, Molecules 22/9 (2017) 1436-1457. PDF
- T. Andrysiak, P. Bełdowski, J. Siódmiak, P. Weber, D. Ledziński, “Hyaluronan-Chondroitin Sulfate Anomalous Crosslinking Due to Temperature Changes”, Polymers 10/5 (2018), 560. PDF
- J. Siódmiak, “Gallstone formation as an example of the two-step space confined aggregation process”, Biosystems 176 (2019), 1-5. PDF
- A. Gadomski, M. Bier, J. Siódmiak, “Spatiotemporal models in biology and the health sciences”, Biosystems 179 (2019), 15-16. www (PDF)
- J. Siódmiak, P. Bełdowski, “Hyaluronic Acid Dynamics and its Interaction with Synovial Fluid Components as a Source of the Color Noise”, Fluctuation and Noise Letters 18/02 (2019), 1940013. www
Inne publikacja/Other publications:
- J. Siódmiak, ”Charge screening in colloidal systems. DLVO theory in protein crystallization”, Student Papers-Complex Systems Summer School, Budapeszt, 2001.
- J. Siódmiak, M. Cyrankiewicz, ”Symulacja komputerowa zaprojektowana do opisu zjawiska wzrostu dwuwymiarowego kwazikryształu proteinowego”, Materiały z VIII Warsztatów Naukowych PTSK ”Symulacje w badaniach i rozwoju”, Gdańsk – Sobieszewo, 2001.
- J. Siódmiak, A. Gadomski, ”Od metody wyznaczania szybkości krystalizacji metali do nowoczesnej technologii otrzymywania kryształów półprzewodnikowych i białkowych (From a method of determination of the crystallization speed to the modern technology of growing semiconductor and protein crystals)”, Chemik 10 (2005) 535-538. www, PDF
Rozprawa doktorska pt.:
“Fenomenologiczny i mezoskopowy opis kinetyki formowania uporządkowanych agregatów cząsteczkowych typu amfifilowego w środowiskach dyspersyjnych” PDF